6Q3C Cell Cycle date Dec 04, 2018
title Cdk2 In Complex With Fraglite1
authors D.J.Wood, M.P.Martin, M.E.M.Noble
compound source
Molecule: Cyclin-Dependent Kinase 2
Chain: A
Synonym: Cell Division Protein Kinase 2,P33 Protein Kinase
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2, Cdkn2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 21
R_factor 0.141 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.439 71.333 71.886 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.29 Å
ligand BYZ, OCS enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFragLites - minimal, halogenated fragments displaying pharmacophore doublets. An efficient approach to druggability assessment and hit generation., Wood D, Lopez-Fernandez JD, Knight L, Al-Khawaldeh I, Gai C, Lin S, Martin MP, Miller D, Cano C, Endicott J, Hardcastle I, Noble M, Waring MJ, J Med Chem. 2019 Mar 12. doi: 10.1021/acs.jmedchem.9b00304. PMID:30860382
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (6q3c.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 6Q3C
  • CSU: Contacts of Structural Units for 6Q3C
  • Structure Factors (1186 Kb)
  • Retrieve 6Q3C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q3C from S2C, [Save to disk]
  • View 6Q3C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Q3C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q3c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Q3C
  • Community annotation for 6Q3C at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science