6Q8O Membrane Protein date Dec 15, 2018
title Respiratory Complex I From Thermus Thermophilus With Bound P A
authors J.Gutierrez-Fernandez, G.S.Minhas, L.A.Sazanov
compound source
Molecule: Nadh-Quinone Oxidoreductase Subunit 1
Chain: 1, B
Synonym: Nadh Dehydrogenase I Chain 1,Ndh-1 Subunit 1
Ec: 1.6.5.11
 Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 2
Chain: 2, C
Synonym: Nadh Dehydrogenase I Chain 2,Ndh-1 Subunit 2
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 3
Chain: 3, D
Synonym: Nadh Dehydrogenase I Chain 3,Ndh-1 Subunit 3
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 4
Chain: 4, E
Synonym: Nadh Dehydrogenase I Chain 4,Ndh-1 Subunit 4
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 5
Chain: 5, F
Synonym: Nadh Dehydrogenase I Chain 5,Ndh-1 Subunit 5
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 6
Chain: 6, G
Synonym: Nadh Dehydrogenase I Subunit 6,Ndh-1 Subunit 6
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 9
Chain: 9, O
Synonym: Nadh Dehydrogenase I Subunit 9,Ndh-1 Subunit 9
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 15
Chain: 7, I
Synonym: Nadh Dehydrogenase I Chain 15,Ndh-1 Subunit 15
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 16
Chain: W, X
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 7
Chain: A, P
Synonym: Nadh Dehydrogenase I Chain 7,Ndh-1 Subunit 7
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 10
Chain: J, R
Synonym: Nadh Dehydrogenase I Chain 10,Ndh-1 Subunit 10
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 11
Chain: K, S
Synonym: Nadh Dehydrogenase I Chain 11,Ndh-1 Subunit 11
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 12
Chain: L, T
Synonym: Nadh Dehydrogenase I Chain 12,Ndh-1 Subunit 12
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 13
Chain: M, U
Synonym: Nadh Dehydrogenase I Chain 13,Ndh-1 Subunit 13
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 14
Chain: N, V
Synonym: Nadh Dehydrogenase I Chain 14,Ndh-1 Subunit 14
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579

Molecule: Nadh-Quinone Oxidoreductase Subunit 8
Chain: H, Q
Synonym: Nadh Dehydrogenase I Subunit 8,Ndh-1 Subunit 8
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579
symmetry Space Group: P 1 21 1
R_factor 0.218 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.140 336.590 262.790 90.00 100.41 90.00
method X-Ray Diffractionresolution 3.61 Å
ligand FES, FMN, HQH, SF4 enzyme Oxidoreductase E.C.1.6.5.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
1, B


2, C


3, D


6, G


7, I


A, P


E, 4


F, 5


N, V


O, 9


Q, H


S, K


T, M, L, J, R, U


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3138 Kb) [Save to disk]
  • Biological Unit Coordinates (6q8o.pdb1.gz) 1555 Kb
  • Biological Unit Coordinates (6q8o.pdb2.gz) 1567 Kb
  • LPC: Ligand-Protein Contacts for 6Q8O
  • CSU: Contacts of Structural Units for 6Q8O
  • Structure Factors (1860 Kb)
  • Retrieve 6Q8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q8O from S2C, [Save to disk]
    • View 6Q8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6Q8O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q8o_O] [6q8o_N] [6q8o_C] [6q8o_R] [6q8o_L] [6q8o_V] [6q8o_T] [6q8o_J] [6q8o_U] [6q8o_D] [6q8o_6] [6q8o_M] [6q8o_X] [6q8o_9] [6q8o_K] [6q8o_2] [6q8o_H] [6q8o_7] [6q8o_4] [6q8o_5] [6q8o_I] [6q8o_B] [6q8o_3] [6q8o_A] [6q8o_F] [6q8o_G] [6q8o_E] [6q8o_1] [6q8o_P] [6q8o_S] [6q8o_W] [6q8o_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6Q8O
  • Community annotation for 6Q8O at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science