6QAI Transferase date Dec 19, 2018
title 2-Desoxiribosyltransferase From Leishmania Mexicana
authors N.Crespo, J.M.Mancheno
compound source
Molecule: 2-Deoxyribosyltransferase
Chain: A, B
Engineered: Yes
 Organism_scientific: Leishmania Mexicana
Organism_taxid: 5665
Gene: Lmxm_23_1580
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.169 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.209 46.265 87.987 90.00 115.06 90.00
method X-Ray Diffractionresolution 1.66 Å
ligand TRS enzyme
Primary reference2'-Deoxyribosyltransferase from Leishmania mexicana, an efficient biocatalyst for one-pot, one-step synthesis of nucleosides from poorly soluble purine bases., Crespo N, Sanchez-Murcia PA, Gago F, Cejudo-Sanches J, Galmes MA, Fernandez-Lucas J, Mancheno JM, Appl Microbiol Biotechnol. 2017 Aug 7. doi: 10.1007/s00253-017-8450-y. PMID:28785897
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (6qai.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 6QAI
  • CSU: Contacts of Structural Units for 6QAI
  • Structure Factors (832 Kb)
  • Retrieve 6QAI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QAI from S2C, [Save to disk]
    • View 6QAI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6QAI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qai_A] [6qai_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6QAI
  • Community annotation for 6QAI at PDBWiki (http://pdbwiki.org)

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