6QAP Oxidoreductase date Dec 19, 2018
title Structure Of The Human Aldehyde Dehydrogenase 9a1 In C2 Spac
authors S.Morera, A.Vigouroux
compound source
Molecule: 4-Trimethylaminobutyraldehyde Dehydrogenase
Chain: A, B, C, D
Synonym: Tmabadh,Aldehyde Dehydrogenase E3 Isozyme,Aldehyde Dehydrogenase Family 9 Member A1,Gamma-Aminobutyraldehyde Dehydrogenase,R-Aminobutyraldehyde Dehydrogenase;
Ec: 1.2.1.47,1.2.1.3,1.2.1.19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldh9a1, Aldh4, Aldh7, Aldh9
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.220 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.290 160.030 84.600 90.00 91.09 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand EDO, NA, PEG enzyme Oxidoreductase E.C.1.2.1.47 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceKinetic and structural analysis of human ALDH9A1., Koncitikova R, Vigouroux A, Kopecna M, Sebela M, Morera S, Kopecny D, Biosci Rep. 2019 Mar 26. pii: BSR20190558. doi: 10.1042/BSR20190558. PMID:30914451
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (620 Kb) [Save to disk]
  • Biological Unit Coordinates (6qap.pdb1.gz) 613 Kb
  • LPC: Ligand-Protein Contacts for 6QAP
  • CSU: Contacts of Structural Units for 6QAP
  • Structure Factors (878 Kb)
  • Retrieve 6QAP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QAP from S2C, [Save to disk]
  • View 6QAP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6QAP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qap_C] [6qap_A] [6qap_D] [6qap_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6QAP
  • Community annotation for 6QAP at PDBWiki (http://pdbwiki.org)

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