6QX1	Isomerase	date	Mar 06, 2019
title	2.7a Structure Of Benzoisoxazole 3 With S.Aureus Dna Gyrase
authors	B.D.Bax
compound		source
Molecule: Dna Gyrase Subunit B Chain: B, D Ec: 5.99.1.3 Engineered: Yes		Organism_scientific: Staphylococcus Aureus Organism_taxid: 1280 Gene: Gyrb, Sa0005 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Gyrase Subunit A Chain: A, C Ec: 5.99.1.3 Engineered: Yes		Organism_scientific: Staphylococcus Aureus Organism_taxid: 1280 Gene: Gyra, Sa0006 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'- D(Apgpcpcpgptpapgpgptpapcpcptpapcpgpgpcp Chain: E, F Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Synthetic Construct Expression_system_taxid: 32630
symmetry	Space Group: P 61	R_factor 0.162 R_Free 0.206
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.190 93.190 408.990 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.65 Å
ligand	CL, GLY, GOL, JK8, MN	enzyme	Isomerase E.C.5.99.1.3 BRENDA
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Structure-guided design of antibacterials that allosterically inhibit DNA gyrase., Thalji RK, Raha K, Andreotti D, Checchia A, Cui H, Meneghelli G, Profeta R, Tonelli F, Tommasi S, Bakshi T, Donovan BT, Howells A, Jain S, Nixon C, Quinque G, McCloskey L, Bax BD, Neu M, Chan PF, Stavenger RA, Bioorg Med Chem Lett. 2019 Mar 22. pii: S0960-894X(19)30168-4. doi:, 10.1016/j.bmcl.2019.03.029. PMID:30962087

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (487 Kb) [Save to disk] Biological Unit Coordinates (6qx1.pdb1.gz) 476 Kb LPC: Ligand-Protein Contacts for 6QX1 CSU: Contacts of Structural Units for 6QX1 Structure Factors (931 Kb) Retrieve 6QX1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6QX1 from S2C, [Save to disk]

View 6QX1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6QX1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6qx1_D] [6qx1_F] [6qx1_B] [6qx1_E] [6qx1_A] [6qx1_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6QX1

Community annotation for 6QX1 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---