6QZ1 Hydrolase date Mar 10, 2019
title Structure Of Mhetase From Ideonella Sakaiensis
authors M.D.Allen, C.W.Johnson, B.C.Knott, G.T.Beckham, J.E.Mcgeehan
compound source
Molecule: Mono(2-Hydroxyethyl) Terephthalate Hydrolase
Chain: A
Synonym: Mhetase
Ec: 3.1.1.102
Engineered: Yes
Organism_scientific: Ideonella Sakaiensis (Strain Nbrc 1106 Tistr 2288 201-F6);
Organism_taxid: 1547922
Gene: Isf6_0224
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: C41
Expression_system_plasmid: Pcj136
symmetry Space Group: P 2 21 21
R_factor 0.165 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.195 89.875 91.995 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BEZ, CA enzyme Hydrolase E.C.3.1.1.102 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCharacterization and engineering of a two-enzyme system for plastics depolymerization., Knott BC, Erickson E, Allen MD, Gado JE, Graham R, Kearns FL, Pardo I, Topuzlu E, Anderson JJ, Austin HP, Dominick G, Johnson CW, Rorrer NA, Szostkiewicz CJ, Copie V, Payne CM, Woodcock HL, Donohoe BS, Beckham GT, McGeehan JE, Proc Natl Acad Sci U S A. 2020 Sep 28. pii: 2006753117. doi:, 10.1073/pnas.2006753117. PMID:32989159
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (6qz1.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 6QZ1
  • CSU: Contacts of Structural Units for 6QZ1
  • Structure Factors (2804 Kb)
  • Retrieve 6QZ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QZ1 from S2C, [Save to disk]
  • View 6QZ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6QZ1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qz1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6QZ1
  • Community annotation for 6QZ1 at PDBWiki (http://pdbwiki.org)

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