6RKU	E. coli DNA Gyrase - DNA binding and cleavage domain in State 1	date
authors	Broeck, A.Vanden., Lamour, V.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	4.00
ligand	JHN	enzyme
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Cryo-EM structure of the complete E. coli DNA gyrase nucleoprotein complex., Vanden Broeck A, Lotz C, Ortiz J, Lamour V, Nat Commun. 2019 Oct 30;10(1):4935. doi: 10.1038/s41467-019-12914-y. PMID:31666516

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (293 Kb) [Save to disk] Biological Unit Coordinates (6rku.pdb1.gz) 277 Kb LPC: Ligand-Protein Contacts for 6RKU CSU: Contacts of Structural Units for 6RKU Retrieve 6RKU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6RKU from S2C, [Save to disk]

View 6RKU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6RKU

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 6rku from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6rku_G] [6rku_A] [6rku_H] [6rku_E] [6rku_C] [6rku_D] [6rku_B] [6rku_F] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6RKU

Community annotation for 6RKU at PDBWiki (http://pdbwiki.org)

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