6ROK Hydrolase date May 13, 2019
title The Crystal Structure Of A Complex Between The Llfpg Protein Dna And An Inhibitor
authors F.Coste, S.Goffinont, B.Castaing
compound source
Molecule: Formamidopyrimidine-Dna Glycosylase
Chain: A
Synonym: Fapy-Dna Glycosylase,Dna-(Apurinic Or Apyrimidinic Lyase Mutm,Ap Lyase Mutm;
Ec: 3.2.2.23,4.2.99.18
Engineered: Yes
Organism_scientific: Lactococcus Lactis Subsp. Cremoris
Organism_taxid: 1359
Gene: Mutm, Fpg, Ncdo763_0992
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cptpcptptptp(3dr)Ptptptpcpt 3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Gpcpgpapgpapapapcpapapapgp
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 41 21 2
R_factor 0.168 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.633 91.633 141.858 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand 3DR, 5JL, GOL, ZN enzyme Hydrolase E.C.3.2.2.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (6rok.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 6ROK
  • CSU: Contacts of Structural Units for 6ROK
  • Structure Factors (1854 Kb)
  • Retrieve 6ROK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ROK from S2C, [Save to disk]
  • View 6ROK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ROK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rok_A] [6rok_D] [6rok_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ROK
  • Community annotation for 6ROK at PDBWiki (http://pdbwiki.org)

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