OCA Atlas for 6RVS

6RVS

Viral Protein

date

May 31, 2019

title

Atomic Structure Of The Epstein-Barr Portal, Structure II

authors

C.Machon, M.Fabrega-Ferrer, D.Zhou, A.Cuervo, J.L.Carrascosa, D.I M.Coll

compound

source

Molecule: Portal Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Engineered: Yes

Organism_scientific: Epstein-Barr Virus (Strain Gd1)
Organism_common: Hhv-4
Organism_taxid: 10376
Strain: Gd1
Gene: Bbrf1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

3.59 Å

Gene
Ontology

Chain	Function	Process	Component
F, A, J, K, E, B, H, C, D, I, G, L

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (706 Kb) [Save to disk]

Biological Unit Coordinates (6rvs.pdb1.gz) 692 Kb

CSU: Contacts of Structural Units for 6RVS

Retrieve 6RVS in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6RVS from S2C, [Save to disk]

View 6RVS in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6RVS

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6rvs_C] [6rvs_A] [6rvs_B] [6rvs_I] [6rvs_G] [6rvs_F] [6rvs_L] [6rvs_K] [6rvs_J] [6rvs_D] [6rvs_H] [6rvs_E]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 6RVS

Community annotation for 6RVS at PDBWiki (http://pdbwiki.org)

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