6RYT Transport Protein date Jun 11, 2019
title Engineered Beta-Lactoglobulin: Variant M107l
authors J.I.Loch, K.Kurpiewska, K.Lewinski
compound source
Molecule: Beta-Lactoglobulin
Chain: A, B
Synonym: Beta-Lg
Engineered: Yes
Mutation: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Gene: Lgb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Origami B
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Duet-1
symmetry Space Group: P 2 21 21
R_factor 0.214 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.160 61.520 78.240 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand GOL, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (6ryt.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 6RYT
  • CSU: Contacts of Structural Units for 6RYT
  • Structure Factors (441 Kb)
  • Retrieve 6RYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RYT from S2C, [Save to disk]
  • View 6RYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6RYT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ryt_B] [6ryt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6RYT
  • Community annotation for 6RYT at PDBWiki (http://pdbwiki.org)

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