6S01 Structure of LEDGF PWWP domain bound H3K36 methylated nucleosome date
authors Wang, H., Farnung, L., Dienemann, C., Cramer, P.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
ligand ML3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


K


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (6s01.pdb1.gz) 230 Kb
  • LPC: Ligand-Protein Contacts for 6S01
  • CSU: Contacts of Structural Units for 6S01
  • Retrieve 6S01 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6S01 from S2C, [Save to disk]
  • View 6S01 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6S01
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6s01 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6s01_I] [6s01_C] [6s01_J] [6s01_H] [6s01_K] [6s01_B] [6s01_F] [6s01_E] [6s01_A] [6s01_G] [6s01_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6S01
  • Community annotation for 6S01 at PDBWiki (http://pdbwiki.org)

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