6S1V Hydrolase date Jun 19, 2019
title Crystal Structure Of Dimeric M-Pmv Protease D26n Mutant In C With Inhibitor
authors S.Wosicki, M.Gilski, M.Jaskolski, H.Zabranska, I.Pichova
compound source
Molecule: Gag-Pro-Pol Polyprotein
Chain: A, B
Synonym: Pr180
Ec: 3.6.1.23,3.4.23.-,2.7.7.49,2.7.7.7,3.1.26.4,2.7.7.-,3.1
Engineered: Yes
Mutation: Yes
Other_details: Gaps In The Sequence Indicate Residues That Modeled Because Of Poor Electron Density;
 Organism_scientific: Mason-Pfizer Monkey Virus
Organism_common: Mpmv
Organism_taxid: 11855
Gene: Gag-Pro-Pol
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_plasmid: Pbps13atg

Molecule: Pro-0a1-Val-Psa-Ala-Met-Thr
Chain: I
Engineered: Yes
Other_details: In The Standard Definition Used By Refmac, T Atom Of The Psa Residue Is Labeled As Ca. In The Pdb Valida Report This Label Is Interpreted As Calpha Causing Geometri Alerts. These Alerts Are False And Should Be Ignored.
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.947 29.504 85.390 90.00 101.71 90.00
method X-Ray Diffractionresolution 1.64 Å
ligand 0A1, PSA enzyme Hydrolase E.C.3.6.1.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (6s1v.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 6S1V
  • CSU: Contacts of Structural Units for 6S1V
  • Structure Factors (200 Kb)
  • Retrieve 6S1V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6S1V from S2C, [Save to disk]
    • View 6S1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6S1V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6s1v_B] [6s1v_A] [6s1v_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6S1V
  • Community annotation for 6S1V at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science