6S54 Transferase date Jun 30, 2019
title Transaminase From Pseudomonas Fluorescens
authors P.Smith, D.Roura Padrosa, F.Lopez-Gallego, F.Paradisi, I.Dreveny
compound source
Molecule: Aspartate Aminotransferase Family Protein
Chain: A, B, C, D
Synonym: Omega-Transaminase
Engineered: Yes
Organism_scientific: Pseudomonas Fluorescens
Organism_taxid: 294
Gene: Cqz98_27790
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.022 94.544 242.218 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.21 Å
ligand GOL, PLP, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (593 Kb) [Save to disk]
  • Biological Unit Coordinates (6s54.pdb1.gz) 583 Kb
  • LPC: Ligand-Protein Contacts for 6S54
  • CSU: Contacts of Structural Units for 6S54
  • Structure Factors (4507 Kb)
  • Retrieve 6S54 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6S54 from S2C, [Save to disk]
  • View 6S54 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6S54
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6s54_C] [6s54_B] [6s54_D] [6s54_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6S54
  • Community annotation for 6S54 at PDBWiki (http://pdbwiki.org)

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