6SWG Gene Regulation date Sep 20, 2019
title Crystal Structure Of The Tasor-Periphilin Core Complex
authors D.M.Prigozhin, S.M.V.Freund, Y.Modis
compound source
Molecule: Periphilin-1
Chain: A, B
Engineered: Yes
Other_details: Tasor Binding Region Of Periphilin (Residues
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Variant: Isoform 2 (Identifier: Q8ney8-2)
Gene: Pphln1, Hspc206, Hspc232
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: Protein Tasor
Chain: C
Engineered: Yes
Other_details: Periphilin Binding Region Of Tasor (Residues 1095)

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Variant: Isoform 1
Gene: Tasor, C3orf63, Fam208a, Kiaa1105
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: P 32 2 1
R_factor 0.228 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.570 93.570 84.970 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.51 Å
ligand SO4 enzyme
Primary referencePeriphilin self-association underpins epigenetic silencing by the HUSH complex., Prigozhin DM, Douse CH, Farleigh LE, Albecka A, Tchasovnikarova IA, Timms RT, Oda SI, Adolf F, Freund SMV, Maslen S, Lehner PJ, Modis Y, Nucleic Acids Res. 2020 Sep 25. pii: 5911750. doi: 10.1093/nar/gkaa785. PMID:32976585
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (6swg.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 6SWG
  • CSU: Contacts of Structural Units for 6SWG
  • Structure Factors (143 Kb)
  • Retrieve 6SWG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SWG from S2C, [Save to disk]
  • View 6SWG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6SWG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6swg_B] [6swg_A] [6swg_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6SWG
  • Community annotation for 6SWG at PDBWiki (http://pdbwiki.org)

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