6SYV Hydrolase date Oct 01, 2019
title The Glucuronoyl Esterase Otce15a S267a Variant From Opitutus Complex With D-Glucuronate
authors S.Mazurkewich, J.C.Navarro Poulsen, J.Larsbrink, L.Lo Leggio
compound source
Molecule: Glucuronoyl Esterase Otce15a
Chain: A
Engineered: Yes
Organism_scientific: Opitutus Terrae Pb90-1
Organism_taxid: 452637
Gene: Oter_0116
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor 0.162 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.507 44.497 50.367 76.43 66.96 70.22
method X-Ray Diffractionresolution 1.12 Å
ligand BDP, EDO, GCU, MG, PEG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (6syv.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 6SYV
  • CSU: Contacts of Structural Units for 6SYV
  • Structure Factors (3973 Kb)
  • Retrieve 6SYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SYV from S2C, [Save to disk]
  • View 6SYV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6SYV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6syv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6SYV
  • Community annotation for 6SYV at PDBWiki (http://pdbwiki.org)

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