6T15 Oxidoreductase date Oct 03, 2019
title The Iii2-Iv(5b)1 Respiratory Supercomplex From S. Cerevisiae
authors A.Marechal, N.Pinotsis, A.Hartley
compound source
Molecule: Cytochrome B-C1 Complex Subunit 1, Mitochondrial Complex III Subunit 1, Core Protein I, Ubiquinol-Cytochrome Reductase Complex Core Protein 1;
Chain: A, L
Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 2, Mitochondrial Complex III Subunit 2, Core Protein II, Ubiquinol-Cytochrom Reductase Complex Core Protein 2;
Chain: B, M

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 2, Mitochondrial Complex III Subunit 2, Core Protein II, Ubiquinol-Cytochrom Complex Core Protein 2;
Chain: C, N

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome C1, Heme Protein, Mitochondrial; Synon Complex III Subunit 4, Complex III Subunit Iv, Cytochrome B Complex Subunit 4, Ubiquinol-Cytochrome-C Reductase Complex Cytochrome C1 Subunit, Cytochrome C-1;
Chain: D, O

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Synonym: Complex III Subunit 5, Rieske Iron-Sulfur Protein, Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subunit;
Chain: E, P
Ec: 7.1.1.8

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 6; Synonym: Compl Subunit 6,Complex III Subunit Vi,Cytochrome C1 Non-Heme 17 Protein,Mitochondrial Hinge Protein,Ubiquinol-Cytochrome C Complex 17 Kda Protein;
Chain: F, Q

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 7; Synonym: Compl Subunit 7,Complex III Subunit Vii,Ubiquinol-Cytochrome C Re Reductase Complex 14 Kda Protein;
Chain: G, R

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 8; Synonym: Compl Subunit 8,Complex III Subunit Vii,Ubiquinol-Cytochrome C Re Complex 11 Kda Protein,Ubiquinol-Cytochrome C Reductase Com Ubiquinone-Binding Protein Qp-C;
Chain: H, S

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 9; Synonym: Compl Subunit 9, Complex III Subunit X, Cytochrome C1 Non-Heme 7. Protein, Ubiquinol-Cytochrome C Reductase Complex 7.3 Kda P
Chain: I, T

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 10; Synonym: Comp Subunit 10,Complex III Subunit Xi, Ubiquinol-Cytochrome C R Complex 8.5 Kda Protein;
Chain: J, U

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 1; Synonym: Cytochro Oxidase Polypeptide I, Cox1;
Chain: a
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 2; Synonym: Cytochro Oxidase Polypeptide II, Cox2;
Chain: b
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 3; Synonym: Cytochro Oxidase Polypeptide III, Cox3;
Chain: c
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 4, Mitochondrial; Sy Cytochrome C Oxidase Polypeptide Iv, Cox4;
Chain: d
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Polypeptide 5b, Mitochondria
Synonym: Cytochrome C Oxidase Polypeptide Vb, Cox5b
Chain: e
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 6, Mitochondrial; Sy Cytochrome C Oxidase Polypeptide Vi, Cox6;
Chain: f
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 7; Synonym: Cytochro Oxidase Polypeptide Vii, Cox7;
Chain: g
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Polypeptide Viii, Mitochondr
Chain: h
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 7a; Synonym: Cytochr Oxidase Polypeptide Viia, Cox9;
Chain: I
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 6b
Chain: j
Synonym: Cytochrome C Oxidase Polypeptide Vib
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 6a, Mitochondrial; C C Oxidase Polypeptide Via, Cox13;
Chain: k
Ec: 1.9.3.1
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292
Gene: Cox13, Ygl191w, G1341
Expression_system: Saccharomyces Cerevisiae S288c
Expression_system_taxid: 559292
Expression_system_variant: W303-1b

Molecule: Cox26; Synonym: Uncharacterized Protein Ydr119w-A
Chain: l

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Rcf2; Synonym: Respiratory Supercomplex Factor 2
Chain: m

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.29 Å
ligand CDL, CU, CUA, FES, HEA, HEC, HEM, MG, PCF, PEF, ZN enzyme E.C.7.1.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B, M


D, O


E, P


F, Q


G, R


J, U


L, A
  • ubiquinol-cytochrome-c reduc...


  • N, C


    S, H


    T, I


    a


    b
  • cytochrome-c oxidase activit...


  • c
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


  • d


    e


    f


    g
  • cytochrome-c oxidase activit...


  • h


    i
  • cytochrome-c oxidase activit...


  • j
  • cytochrome-c oxidase activit...


  • k
  • cytochrome-c oxidase activit...
  • enzyme regulator activity


  • l


    m


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (905 Kb) [Save to disk]
  • Biological Unit Coordinates (6t15.pdb1.gz) 883 Kb
  • LPC: Ligand-Protein Contacts for 6T15
  • CSU: Contacts of Structural Units for 6T15
  • Retrieve 6T15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6T15 from S2C, [Save to disk]
  • View 6T15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6T15
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6t15_P] [6t15_h] [6t15_L] [6t15_N] [6t15_m] [6t15_I] [6t15_D] [6t15_F] [6t15_H] [6t15_O] [6t15_E] [6t15_R] [6t15_C] [6t15_A] [6t15_B] [6t15_T] [6t15_k] [6t15_i] [6t15_Q] [6t15_d] [6t15_G] [6t15_e] [6t15_S] [6t15_b] [6t15_J] [6t15_M] [6t15_l] [6t15_c] [6t15_a] [6t15_g] [6t15_U] [6t15_j] [6t15_f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6T15
  • Community annotation for 6T15 at PDBWiki (http://pdbwiki.org)

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