6TNA T-Rna date Nov 16, 1978
title Crystal Structure Of Yeast Phenylalanine T-Rna. I.Crystallog Refinement
authors J.L.Sussman, S.R.Holbrook, R.W.Warrant, G.M.Church, S.H.Kim
compound source
Molecule: Trnaphe
Chain: A
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 21 2 21
R_factor 0.198 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.000 56.000 161.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 1MA, 2MG, 5MC, 5MU, 7MG, H2U, M2G, MG, OMC, OMG, PSU, YG enzyme
note 6TNA (Molecule of the Month:pdb15)supersedes 5TNA, 1TNA
Primary referenceCrystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement., Sussman JL, Holbrook SR, Warrant RW, Church GM, Kim SH, J Mol Biol 1978 Aug 25;123(4):607-30. PMID:357742
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (6tna.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 6TNA
  • CSU: Contacts of Structural Units for 6TNA
  • Likely Quarternary Molecular Structure file(s) for 6TNA
  • Retrieve 6TNA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TNA from S2C, [Save to disk]
  • View 6TNA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6TNA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 6TNA, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Fold representative 6tna from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tna] [6tna_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6TNA
  • Community annotation for 6TNA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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