6TW4 Dna Binding Protein date Jan 12, 2020
title Humrada22f In Complex With Compound 6
authors M.E.Marsh, D.E.Scott, A.G.Coyne, J.Skidmore, C.Abell, M.Hyvonen
compound source
Molecule: Dna Repair And Recombination Protein Rada
Chain: A
Fragment: Humrada22f
Engineered: Yes
Mutation: Yes
 Organism_scientific: Pyrococcus Furiosus (Strain Atcc 43587 3638 Jcm 8422 Vc1);
Organism_taxid: 186497
Gene: Rada, Pf1926
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbat4
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.390 60.150 88.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.73 Å
ligand CA, NZW enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (6tw4.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 6TW4
  • CSU: Contacts of Structural Units for 6TW4
  • Structure Factors (2273 Kb)
  • Retrieve 6TW4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TW4 from S2C, [Save to disk]
    • View 6TW4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6TW4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tw4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6TW4
  • Community annotation for 6TW4 at PDBWiki (http://pdbwiki.org)

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