6U5D Isomerase date Aug 27, 2019
title Rt Xfel Structure Of Cypa Solved Using Lcp Injection System
authors A.M.Wolff, I.D.Young, R.G.Sierra, A.S.Brewster, J.D.Koralek, S.Bo N.K.Sauter, J.S.Fraser, M.C.Thompson
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase A
Chain: A
Synonym: Ppiase A,Cyclophilin A,Cyclosporin A-Binding Prote Rotamase A;
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppia, Cypa
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 21
R_factor 0.143 R_Free 0.167
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.010 52.610 89.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (6u5d.pdb1.gz) 88 Kb
  • CSU: Contacts of Structural Units for 6U5D
  • Structure Factors (305 Kb)
  • Retrieve 6U5D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U5D from S2C, [Save to disk]
  • View 6U5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6U5D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6u5d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u5d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6U5D
  • Community annotation for 6U5D at PDBWiki (http://pdbwiki.org)

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