6UEO Dna Binding Protein Dna date Sep 22, 2019
title Structure Of A. Thaliana Tbp-Ac Mismatch Dna Site
authors M.A.Schumacher
compound source
Molecule: Tata-Box-Binding Protein 1
Chain: A, D, G, J
Synonym: Attbp1,Tata Sequence-Binding Protein 1,Tbp-1,Tata- Factor 1,Tata-Box Factor 1,Transcription Initiation Factor Subunit;
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Tbp1, At3g13445, Mrp15.10
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gpcptpaptpapapapapgpgpgpcp
Chain: B, E, H, K
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Tpgpcpcpcpcptptptpaptpapgp
Chain: C, F, I, L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor 0.214 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.242 55.512 146.340 89.97 90.03 90.14
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G
  • obsolete general RNA polymer...


  • Primary referenceDNA mismatches reveal conformational penalties in protein-DNA recognition., Afek A, Shi H, Rangadurai A, Sahay H, Senitzki A, Xhani S, Fang M, Salinas R, Mielko Z, Pufall MA, Poon GMK, Haran TE, Schumacher MA, Al-Hashimi HM, Gordan R, Nature. 2020 Nov;587(7833):291-296. doi: 10.1038/s41586-020-2843-2. Epub 2020 Oct, 21. PMID:33087930
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk]
  • Biological Unit Coordinates (6ueo.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (6ueo.pdb2.gz) 85 Kb
  • Biological Unit Coordinates (6ueo.pdb3.gz) 85 Kb
  • Biological Unit Coordinates (6ueo.pdb4.gz) 85 Kb
  • CSU: Contacts of Structural Units for 6UEO
  • Structure Factors (2174 Kb)
  • Retrieve 6UEO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UEO from S2C, [Save to disk]
  • View 6UEO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6UEO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ueo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ueo_L] [6ueo_E] [6ueo_B] [6ueo_D] [6ueo_F] [6ueo_G] [6ueo_J] [6ueo_C] [6ueo_I] [6ueo_H] [6ueo_A] [6ueo_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6UEO
  • Community annotation for 6UEO at PDBWiki (http://pdbwiki.org)

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