6UGD Motor Protein date Sep 26, 2019
title Katanin Hexamer In The Spiral Conformation In Complex With S
authors E.A.Zehr, A.Roll-Mecak
compound source
Molecule: Meiotic Spindle Formation Protein Mei-1
Chain: A, B, C, D, E, F
Ec: 5.6.1.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Mei-1, T01g9.5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest566

Molecule: Polyglutamate Peptide
Chain: G
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Alamanda Polymers, Cas#26247-79-0
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
ligand ATP, MG enzyme Isomerase E.C.5.6.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk]
  • Biological Unit Coordinates (6ugd.pdb1.gz) 257 Kb
  • LPC: Ligand-Protein Contacts for 6UGD
  • CSU: Contacts of Structural Units for 6UGD
  • Retrieve 6UGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UGD from S2C, [Save to disk]
    • View 6UGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6UGD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ugd_F] [6ugd_B] [6ugd_A] [6ugd_G] [6ugd_D] [6ugd_E] [6ugd_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6UGD
  • Community annotation for 6UGD at PDBWiki (http://pdbwiki.org)

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