6UMW Transferase Transferase Inhibitor date Oct 10, 2019
title Crystal Structure Of Hephb1 Bound With Chlortetracycline
authors M.Ahmed, P.Wang, H.Sadek
compound source
Molecule: Ephrin Type-B Receptor 1
Chain: A
Fragment: Kinase Domain (Unp Residues 602-896)
Synonym: Elk,Eph Tyrosine Kinase 2,Eph-Like Kinase 6,Hek6,N Expressed Eph-Related Tyrosine Kinase,Net,Tyrosine-Protein Receptor Eph-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ephb1, Elk, Epht2, Hek6, Net
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.221
length a length b length c angle alpha angle beta angle gamma
32.932 91.090 96.995 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand CTC, PTR enzyme Transferase E.C. BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (6umw.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 6UMW
  • CSU: Contacts of Structural Units for 6UMW
  • Structure Factors (273 Kb)
  • Retrieve 6UMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UMW from S2C, [Save to disk]
  • View 6UMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6UMW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6umw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6umw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6UMW
  • Community annotation for 6UMW at PDBWiki (http://pdbwiki.org)

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