6V6U Hydrolase date Dec 06, 2019
title Crystal Structure Of Rhoa-Gdp With Novel Switch I Conformati
authors Y.Lin, Y.Zheng
compound source
Molecule: Transforming Protein Rhoa
Chain: A
Fragment: C-Terminal Trancated At Residue 181
Synonym: Rho Cdna Clone 12,H12
Ec: 3.6.5.2
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rhoa, Arh12, Arha, Rho12
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
symmetry Space Group: P 1 21 1
R_factor 0.170 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.216 87.192 34.271 90.00 95.06 90.00
method X-Ray Diffractionresolution 1.16 Å
ligand DIO, GDP, MG enzyme Hydrolase E.C.3.6.5.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (6v6u.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 6V6U
  • CSU: Contacts of Structural Units for 6V6U
  • Structure Factors (1475 Kb)
  • Retrieve 6V6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V6U from S2C, [Save to disk]
    • View 6V6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6V6U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v6u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6V6U
  • Community annotation for 6V6U at PDBWiki (http://pdbwiki.org)

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