6VDK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	DLU, MG	enzyme
Gene Ontology	Chain Function Process Component J, D, P, C, B, A, M, I
Primary reference	A Peptide Derived from Lens Epithelium-Derived Growth Factor Stimulates HIV-1 DNA Integration and Facilitates Intasome Structural Studies., Li M, Chen X, Wang H, Jurado KA, Engelman AN, Craigie R, J Mol Biol. 2020 Feb 13. pii: S0022-2836(20)30106-6. doi:, 10.1016/j.jmb.2020.01.040. PMID:32061936

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk] Biological Unit Coordinates (6vdk.pdb1.gz) 218 Kb LPC: Ligand-Protein Contacts for 6VDK CSU: Contacts of Structural Units for 6VDK Retrieve 6VDK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6VDK from S2C, [Save to disk]

View 6VDK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6vdk_A] [6vdk_B] [6vdk_C] [6vdk_D] [6vdk_E] [6vdk_F] [6vdk_G] [6vdk_H] [6vdk_I] [6vdk_J] [6vdk_M] [6vdk_P] SWISS-PROT database:

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