6VK9 Protein Fibril date Jan 19, 2020
title Cryo-Em Structure Of Pila-Nc From Geobacter Sulfurreducens
authors Y.Gu, V.Srikanth, N.S.Malvankar, F.A.Samatey
compound source
Molecule: Geopilin Domain 1 Protein
Chain: A, O, Q, S, U, G, I, K, M, C, E, W, Y, 0, 2, 4
Fragment: Unp Residues 30-90
Engineered: Yes
 Organism_scientific: Geobacter Sulfurreducens
Organism_taxid: 35554
Gene: Pila-N, Gsu1496
Expression_system: Geobacter Sulfurreducens
Expression_system_taxid: 35554

Molecule: Geopilin Domain 2 Protein
Chain: D, B, P, R, T, V, H, J, L, N, F, X, Z, 1, 3, 5
Fragment: Unp Residues 21-124
Engineered: Yes
Organism_scientific: Geobacter Sulfurreducens
Organism_taxid: 35554
Gene: Pila-C, Gsu1497
Expression_system: Geobacter Sulfurreducens
Expression_system_taxid: 35554
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (360 Kb) [Save to disk]
  • Biological Unit Coordinates (6vk9.pdb1.gz) 351 Kb
  • CSU: Contacts of Structural Units for 6VK9
  • Retrieve 6VK9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VK9 from S2C, [Save to disk]
    • View 6VK9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VK9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vk9_3] [6vk9_C] [6vk9_4] [6vk9_D] [6vk9_1] [6vk9_J] [6vk9_B] [6vk9_T] [6vk9_H] [6vk9_S] [6vk9_G] [6vk9_L] [6vk9_X] [6vk9_N] [6vk9_R] [6vk9_W] [6vk9_F] [6vk9_K] [6vk9_Q] [6vk9_Z] [6vk9_A] [6vk9_O] [6vk9_I] [6vk9_V] [6vk9_P] [6vk9_0] [6vk9_2] [6vk9_M] [6vk9_Y] [6vk9_E] [6vk9_U] [6vk9_5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VK9
  • Community annotation for 6VK9 at PDBWiki (http://pdbwiki.org)

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