6VQN Cell Cycle date Feb 05, 2020
title Co-Crystal Structure Of Human Pd-L1 Complexed With Compound
authors A.White, D.Lakshminarasimhan, C.Leo, R.K.Suto
compound source
Molecule: Programmed Cell Death 1 Ligand 1
Chain: A, B, C
Synonym: Hpd-L1,B7 Homolog 1,B7-H1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd274, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pet28
symmetry Space Group: C 2 2 21
R_factor 0.177 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.003 172.173 80.585 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand R81 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (6vqn.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (6vqn.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 6VQN
  • CSU: Contacts of Structural Units for 6VQN
  • Structure Factors (246 Kb)
  • Retrieve 6VQN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VQN from S2C, [Save to disk]
    • View 6VQN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VQN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vqn_B] [6vqn_A] [6vqn_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VQN
  • Community annotation for 6VQN at PDBWiki (http://pdbwiki.org)

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