6VW1 Cell Invasion date Feb 18, 2020
title Structure Of Sars-Cov-2 Chimeric Receptor-Binding Domain Com With Its Receptor Human Ace2
authors J.Shang, G.Ye, K.Shi, Y.S.Wan, H.Aihara, F.Li
compound source
Molecule: Angiotensin-Converting Enzyme 2
Chain: A, B
Synonym: Ace-Related Carboxypeptidase,Angiotensin-Convertin Homolog,Aceh,Metalloprotease Mprot15;
Ec: 3.4.17.23,3.4.17.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ace2, Unq868pro1885
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Sars-Cov-2 Chimeric Rbd
Chain: E, F
Synonym: S Glycoprotein,E2,Peplomer Protein
Engineered: Yes

Organism_scientific: Human Sars Coronavirus, Severe Acute Respiratory Syndrome Coronavirus 2;
Organism_common: Sars-Cov, 2019-Ncov
Organism_taxid: 694009, 2697049
Gene: S, 2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.435 118.034 112.075 90.00 93.12 90.00
method X-Ray Diffractionresolution 2.68 Å
ligand BMA, CL, EDO, NAG, ZN enzyme Hydrolase E.C.3.4.17.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of receptor recognition by SARS-CoV-2., Shang J, Ye G, Shi K, Wan Y, Luo C, Aihara H, Geng Q, Auerbach A, Li F, Nature. 2020 Mar 30. pii: 10.1038/s41586-020-2179-y. doi:, 10.1038/s41586-020-2179-y. PMID:32225175
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (563 Kb) [Save to disk]
  • Biological Unit Coordinates (6vw1.pdb1.gz) 278 Kb
  • Biological Unit Coordinates (6vw1.pdb2.gz) 278 Kb
  • LPC: Ligand-Protein Contacts for 6VW1
  • CSU: Contacts of Structural Units for 6VW1
  • Structure Factors (2414 Kb)
  • Retrieve 6VW1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VW1 from S2C, [Save to disk]
  • View 6VW1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VW1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6vw1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vw1_B] [6vw1_F] [6vw1_E] [6vw1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VW1
  • Community annotation for 6VW1 at PDBWiki (http://pdbwiki.org)

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