6VW7 Oxidoreductase date Feb 18, 2020
title Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necato Bound
authors T.Young
compound source
Molecule: Nad-Dependent Formate Dehydrogenase Gamma Subunit
Chain: A, C
Ec: 1.2.1.2
Engineered: Yes
Organism_scientific: Cupriavidus Necator
Organism_taxid: 106590
Gene: Fdsg, H16_a0640
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Ptrc12hlb-Fdsgbcd

Molecule: Nad-Dependent Formate Dehydrogenase Beta Subunit
Chain: B, D
Ec: 1.2.1.2
Engineered: Yes

Organism_scientific: Cupriavidus Necator
Organism_taxid: 106590
Gene: Fdsb, H16_a0641
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Ptrc12hlb-Fdsbgcd
symmetry Space Group: C 1 2 1
R_factor 0.159 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.656 127.050 99.840 90.00 123.50 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand FES, FMN, NAI, SF4 enzyme Oxidoreductase E.C.1.2.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceCrystallographic and kinetic analyses of the FdsBG subcomplex of the cytosolic formate dehydrogenase FdsABG from Cupriavidus necator., Young T, Niks D, Hakopian S, Tam TK, Yu X, Hille R, Blaha GM, J Biol Chem. 2020 Apr 5. pii: RA120.013264. doi: 10.1074/jbc.RA120.013264. PMID:32249211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (458 Kb) [Save to disk]
  • Biological Unit Coordinates (6vw7.pdb1.gz) 226 Kb
  • Biological Unit Coordinates (6vw7.pdb2.gz) 228 Kb
  • LPC: Ligand-Protein Contacts for 6VW7
  • CSU: Contacts of Structural Units for 6VW7
  • Structure Factors (2644 Kb)
  • Retrieve 6VW7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VW7 from S2C, [Save to disk]
  • View 6VW7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VW7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6vw7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vw7_A] [6vw7_D] [6vw7_B] [6vw7_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VW7
  • Community annotation for 6VW7 at PDBWiki (http://pdbwiki.org)

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