6VYP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, f, F, b


G, C, g, c


H, D, d, h


e, a, A, E


k, K, m, M


Primary referenceCrystal Structure of the LSD1/CoREST Histone Demethylase Bound to Its Nucleosome Substrate., Kim SA, Zhu J, Yennawar N, Eek P, Tan S, Mol Cell. 2020 May 4. pii: S1097-2765(20)30261-6. doi:, 10.1016/j.molcel.2020.04.019. PMID:32396821
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2352 Kb) [Save to disk]
  • Biological Unit Coordinates (6vyp.pdb1.gz) 1171 Kb
  • Biological Unit Coordinates (6vyp.pdb2.gz) 1162 Kb
  • LPC: Ligand-Protein Contacts for 6VYP
  • CSU: Contacts of Structural Units for 6VYP
  • Structure Factors (1477 Kb)
  • Retrieve 6VYP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VYP from S2C, [Save to disk]
    • View 6VYP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vyp_H] [6vyp_I] [6vyp_J] [6vyp_K] [6vyp_L] [6vyp_M] [6vyp_N] [6vyp_i] [6vyp_A] [6vyp_B] [6vyp_C] [6vyp_D] [6vyp_E] [6vyp_F] [6vyp_G] [6vyp_a] [6vyp_b] [6vyp_c] [6vyp_d] [6vyp_e] [6vyp_f] [6vyp_g] [6vyp_h] [6vyp_j] [6vyp_k] [6vyp_l] [6vyp_m] [6vyp_n]
  • SWISS-PROT database:

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