6VZW Ligase date Feb 28, 2020
title Ttll6 Bound To The Initiation Analog
authors K.K.Mahalingan, E.K.Keenen, M.Strickland, Y.Li, Y.Liu, H.L.Ball, T.E.Tanner, N.Tjandra, A.Roll-Mecak
compound source
Molecule: Tubulin Polyglutamylase Ttll6
Chain: A, B, C, D
Synonym: Tubulin--Tyrosine Ligase-Like Protein 6
Ec: 6.-.-.-
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ttll6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.217 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.254 110.585 173.579 90.00 90.14 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 2TI, ADP, GOL, MG enzyme Ligase E.C.6 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (547 Kb) [Save to disk]
  • Biological Unit Coordinates (6vzw.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (6vzw.pdb2.gz) 140 Kb
  • Biological Unit Coordinates (6vzw.pdb3.gz) 136 Kb
  • Biological Unit Coordinates (6vzw.pdb4.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 6VZW
  • CSU: Contacts of Structural Units for 6VZW
  • Structure Factors (4409 Kb)
  • Retrieve 6VZW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VZW from S2C, [Save to disk]
    • View 6VZW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VZW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vzw_A] [6vzw_D] [6vzw_C] [6vzw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VZW
  • Community annotation for 6VZW at PDBWiki (http://pdbwiki.org)

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