6W1D Transferase date Mar 04, 2020
title Structure Of Human Mitochondrial Complex Nfs1-Iscu2 (Wt)-Isd E.Coli Acp1 At 1.8 A Resolution (Niau)2
authors M.T.Boniecki, M.Cygler
compound source
Molecule: Cysteine Desulfurase, Mitochondrial
Chain: A
Ec: 2.8.1.7
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nfs1, Nifs, Hussy-08
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Lyr Motif-Containing Protein 4
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lyrm4, C6orf149, Isd11, Cgi-203
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Acyl Carrier Protein
Chain: C
Synonym: Acp
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Iron-Sulfur Cluster Assembly Enzyme Iscu, Mitocho
Chain: D
Synonym: Nifu-Like N-Terminal Domain-Containing Protein,Nif Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Iscu, Nifun
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.159 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.348 86.348 245.359 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 1PE, 8Q1, DTT, EDO, EDT, GOL, MES, P15, PEG, PG4, PGE, PLP enzyme Transferase E.C.2.8.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (6w1d.pdb1.gz) 483 Kb
  • LPC: Ligand-Protein Contacts for 6W1D
  • CSU: Contacts of Structural Units for 6W1D
  • Structure Factors (1727 Kb)
  • Retrieve 6W1D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6W1D from S2C, [Save to disk]
    • View 6W1D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6W1D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6w1d_B] [6w1d_C] [6w1d_A] [6w1d_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6W1D
  • Community annotation for 6W1D at PDBWiki (http://pdbwiki.org)

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