6W75 Viral Protein date Mar 18, 2020
title 1.95 Angstrom Resolution Crystal Structure Of Nsp10 - Nsp16 From Sars-Cov-2
authors G.Minasov, L.Shuvalova, M.Rosas-Lemus, O.Kiryukhina, G.Wiersum, A L.Jaroszewski, P.J.Stogios, T.Skarina, K.J.F.Satchell, Center F Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: 2'-O-Methyltransferase
Chain: A, C
Fragment: Unp Residues 6799-7096
Synonym: Non-Structural Protein 16,Nsp16,Sars-Cov-2 Nsp16
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg53

Molecule: Non-Structural Protein 10
Chain: B, D
Fragment: Unp Residues 4254-4392
Synonym: Nsp10,Growth Factor-Like Peptide,Gfl,Sars-Cov-2 Ns
Engineered: Yes

Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg53
symmetry Space Group: P 32 2 1
R_factor 0.157 R_Free 0.175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
166.245 166.245 98.279 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand FMT, NA, SAM, ZN enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
D, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • Biological Unit Coordinates (6w75.pdb1.gz) 137 Kb
  • Biological Unit Coordinates (6w75.pdb2.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 6W75
  • CSU: Contacts of Structural Units for 6W75
  • Structure Factors (3163 Kb)
  • Retrieve 6W75 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6W75 from S2C, [Save to disk]
  • View 6W75 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6W75
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6w75 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6w75_A] [6w75_C] [6w75_B] [6w75_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6W75
  • Community annotation for 6W75 at PDBWiki (http://pdbwiki.org)

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