6WIG Plant Protein Dna date Apr 09, 2020
title Structure Of Stenofolia Protein Hd Domain Bound With Dna
authors J.Deng, S.Peng, P.Pathak
compound source
Molecule: Stenofolia
Chain: A, B
Engineered: Yes
 Organism_scientific: Medicago Truncatula
Organism_common: Barrel Medic
Organism_taxid: 3880
Gene: Stf
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Pgpcpapapaptptpapaptpgpaptptptpaptptpc -3');
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Medicago Truncatula
Organism_taxid: 3880

Molecule: Dna (5'- D(Pcptptpgpapaptpapapaptpcpaptptpapaptpt -3');
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Medicago Truncatula
Organism_taxid: 3880
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.061 49.489 69.810 90.00 106.46 90.00
method X-Ray Diffractionresolution 2.10 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (6wig.pdb1.gz) 92 Kb
  • CSU: Contacts of Structural Units for 6WIG
  • Structure Factors (117 Kb)
  • Retrieve 6WIG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WIG from S2C, [Save to disk]
    • View 6WIG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WIG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wig_D] [6wig_B] [6wig_A] [6wig_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WIG
  • Community annotation for 6WIG at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science