6WTM Hydrolase Hydrolase Inhibitor date May 03, 2020
title Feline Coronavirus Drug Inhibits The Main Protease Of Sars-C Blocks Virus Replication
authors M.B.Khan, E.Arutyunova, H.S.Young, M.J.Lemieux
compound source
Molecule: 3c-Like Proteinase
Chain: A, B
Synonym: 3cl-Pro, 3clp
Ec: 3.4.22.69
Engineered: Yes
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.840 53.600 114.870 90.00 101.22 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand
enzyme Hydrolase E.C.3.4.22.69 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFeline coronavirus drug inhibits the main protease of SARS-CoV-2 and blocks virus replication., Vuong W, Khan MB, Fischer C, Arutyunova E, Lamer T, Shields J, Saffran HA, McKay RT, van Belkum MJ, Joyce MA, Young HS, Tyrrell DL, Vederas JC, Lemieux MJ, Nat Commun. 2020 Aug 27;11(1):4282. doi: 10.1038/s41467-020-18096-2. PMID:32855413
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk]
  • Biological Unit Coordinates (6wtm.pdb1.gz) 196 Kb
  • CSU: Contacts of Structural Units for 6WTM
  • Structure Factors (1535 Kb)
  • Retrieve 6WTM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WTM from S2C, [Save to disk]
    • View 6WTM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WTM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wtm_B] [6wtm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WTM
  • Community annotation for 6WTM at PDBWiki (http://pdbwiki.org)

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