6X1A Membrane Protein date May 18, 2020
title Non Peptide Agonist Pf-06882961, Bound To Glucagon-Like Pept (Glp-1) Receptor
authors M.J.Belousoff, X.Zhang, R.Danev
compound source
Molecule: Guanine Nucleotide-Binding Protein G(S) Subunit A Isoforms Short;
Chain: A
Synonym: Adenylate Cyclase-Stimulating G Alpha Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnas, Gnas1, Gsp
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(T) Beta-1;
Chain: B
Synonym: Transducin Beta Chain 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnb1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(O) Gamma-2;
Chain: G
Synonym: G Gamma-I
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gng2
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Nanobody35
Chain: N
Engineered: Yes
Organism_scientific: Lama Glama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glucagon-Like Peptide 1 Receptor
Chain: R
Synonym: Glp-1r
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Glp1r
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.50 Å
ligand UK4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • G-protein coupled acetylchol...

    • R
  • glucagon receptor activity


    • Primary referenceDifferential GLP-1R Binding and Activation by Peptide and Non-peptide Agonists., Zhang X, Belousoff MJ, Zhao P, Kooistra AJ, Truong TT, Ang SY, Underwood CR, Egebjerg T, Senel P, Stewart GD, Liang YL, Glukhova A, Venugopal H, Christopoulos A, Furness SGB, Miller LJ, Reedtz-Runge S, Langmead CJ, Gloriam DE, Danev R, Sexton PM, Wootten D, Mol Cell. 2020 Oct 1. pii: S1097-2765(20)30650-X. doi:, 10.1016/j.molcel.2020.09.020. PMID:33027691
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (6x1a.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 6X1A
  • CSU: Contacts of Structural Units for 6X1A
  • Retrieve 6X1A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6X1A from S2C, [Save to disk]
    • View 6X1A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6X1A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6x1a_R] [6x1a_G] [6x1a_B] [6x1a_A] [6x1a_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6X1A
  • Community annotation for 6X1A at PDBWiki (http://pdbwiki.org)

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