6X34 Transport Protein Isomerase date May 21, 2020
title Pig R615c Ryr1 Egta (All Classes, Open)
authors K.W.Woll, O.Haji-Ghassemi, F.Van Petegem
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Fkbp1b
Chain: A, C, E, G
Synonym: Ppiase Fkbp1b,12.6 Kda Fk506-Binding Protein,Fkbp- Fk506-Binding Protein 1b,Fkbp-1b,Immunophilin Fkbp12.6,Rota Fkbp-12;
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fkbp1b, Fkbp12.6, Fkbp1l, Fkbp9, Otk4
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ryanodine Receptor
Chain: B, D, F, H

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.70 Å
ligand ZN enzyme Isomerase E.C.5.2.1.8 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1792 Kb) [Save to disk]
  • Biological Unit Coordinates (6x34.pdb1.gz) 1760 Kb
  • LPC: Ligand-Protein Contacts for 6X34
  • CSU: Contacts of Structural Units for 6X34
  • Retrieve 6X34 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6X34 from S2C, [Save to disk]
  • View 6X34 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6X34
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6x34_G] [6x34_A] [6x34_F] [6x34_B] [6x34_D] [6x34_C] [6x34_E] [6x34_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6X34
  • Community annotation for 6X34 at PDBWiki (http://pdbwiki.org)

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