6X6C	Immune System	date	May 27, 2020
title	Cryo-Em Structure Of Nlrp1-Dpp9-Vbp Complex
authors	L.R.Hollingsworth, H.Sharif, A.R.Griswold, P.Fontana, J.Mintseri K.B.Dagbay, J.A.Paulo, S.P.Gygi, D.A.Bachovchin, H.Wu
compound		source
Molecule: Dipeptidyl Peptidase 9 Chain: A, D Synonym: Dp9,Dipeptidyl Peptidase Iv-Related Protein 2,Dprp Dipeptidyl Peptidase Ix,Dpp Ix,Dipeptidyl Peptidase-Like Pr Dplp9; Ec: 3.4.14.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dpp9, Dprp2 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: Nacht, Lrr And Pyd Domains-Containing Protein 1 Chain: E, F Synonym: Caspase Recruitment Domain-Containing Protein 7,De Effector Filament-Forming Ced-4-Like Apoptosis Protein,Nucl Binding Domain And Caspase Recruitment Domain; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nlrp1, Card7, Defcap, Kiaa0926, Nac, Nalp1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	2.90 Å
ligand	GK2	enzyme	Hydrolase E.C.3.4.14.5 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk] Biological Unit Coordinates (6x6c.pdb1.gz) 282 Kb LPC: Ligand-Protein Contacts for 6X6C CSU: Contacts of Structural Units for 6X6C Retrieve 6X6C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6X6C from S2C, [Save to disk]

View 6X6C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6X6C

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6x6c_A] [6x6c_E] [6x6c_D] [6x6c_F] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6X6C

Community annotation for 6X6C at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---