6X9S date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, MAN, NAG enzyme
Primary referenceVisualization of the HIV-1 Env glycan shield across scales., Berndsen ZT, Chakraborty S, Wang X, Cottrell CA, Torres JL, Diedrich JK, Lopez CA, Yates JR 3rd, van Gils MJ, Paulson JC, Gnanakaran S, Ward AB, Proc Natl Acad Sci U S A. 2020 Nov 10;117(45):28014-28025. doi:, 10.1073/pnas.2000260117. Epub 2020 Oct 22. PMID:33093196
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (6x9s.pdb1.gz) 386 Kb
  • LPC: Ligand-Protein Contacts for 6X9S
  • CSU: Contacts of Structural Units for 6X9S
  • Retrieve 6X9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6X9S from S2C, [Save to disk]
  • View 6X9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6x9s_A] [6x9s_B] [6x9s_H] [6x9s_L]
  • SWISS-PROT database:

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