6XEY	Viral Protein Immune System	date	Jun 14, 2020
title	Cryo-Em Structure Of The Sars-Cov-2 Spike Glycoprotein Bound
authors	M.Rapp, L.Shapiro, D.D.Ho
compound		source
Molecule: Spike Glycoprotein Chain: A, B, C Synonym: S Glycoprotein,E2,Peplomer Protein,Sars-Cov-2 Spik Glycoprotein; Engineered: Yes		Organism_scientific: Severe Acute Respiratory Syndrome Coro 2; Organism_common: 2019-Ncov Organism_taxid: 2697049 Gene: S, 2 Expression_system: Homo Sapiens Expression_system_taxid: 9606
Molecule: 2-4 Heavy Chain Chain: F, H, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606
Molecule: 2-4 Light Chain Chain: G, K, L Synonym: Igh + Igl C137_light_iglv2-8_iglj2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.25 Å
ligand	BMA, NAG	enzyme
Primary reference	Potent neutralizing antibodies against multiple epitopes on SARS-CoV-2 spike., Liu L, Wang P, Nair MS, Yu J, Rapp M, Wang Q, Luo Y, Chan JF, Sahi V, Figueroa A, Guo XV, Cerutti G, Bimela J, Gorman J, Zhou T, Chen Z, Yuen KY, Kwong PD, Sodroski JG, Yin MT, Sheng Z, Huang Y, Shapiro L, Ho DD, Nature. 2020 Aug;584(7821):450-456. doi: 10.1038/s41586-020-2571-7. Epub 2020 Jul, 22. PMID:32698192

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (536 Kb) [Save to disk] Biological Unit Coordinates (6xey.pdb1.gz) 509 Kb LPC: Ligand-Protein Contacts for 6XEY CSU: Contacts of Structural Units for 6XEY Retrieve 6XEY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6XEY from S2C, [Save to disk]

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Visual 3D analysis of 6XEY

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6xey_K] [6xey_G] [6xey_B] [6xey_C] [6xey_H] [6xey_F] [6xey_L] [6xey_A] [6xey_J] SWISS-PROT database: Domain organization of by SWISSPFAM

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