6XFN Hydrolase date Jun 15, 2020
title Crystal Structure Of The Sars-Cov-2 (Covid-19) Main Protease Complex With Uaw243
authors M.Sacco, C.Ma, J.Wang, Y.Chen
compound source
Molecule: 3c-Like Proteinase
Chain: A
Fragment: Unp Residues 3264-3569
Synonym: 3cl-Pro,3clp,Main Protease,Mpro,Non-Structural Pro Nsp5,Sars Coronavirus Main Proteinase;
Ec: 3.4.22.69
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Uaw243
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.195 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.566 54.317 44.492 90.00 100.86 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand APY, GOL, UZ7, V1V enzyme Hydrolase E.C.3.4.22.69 BRENDA
Primary referenceStructure and inhibition of the SARS-CoV-2 main protease reveals strategy for developing dual inhibitors against M(pro) and cathepsin L., Sacco MD, Ma C, Lagarias P, Gao A, Townsend JA, Meng X, Dube P, Zhang X, Hu Y, Kitamura N, Hurst B, Tarbet B, Marty MT, Kolocouris A, Xiang Y, Chen Y, Wang J, Sci Adv. 2020 Nov 6. pii: sciadv.abe0751. doi: 10.1126/sciadv.abe0751. PMID:33158912
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (6xfn.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 6XFN
  • CSU: Contacts of Structural Units for 6XFN
  • Structure Factors (736 Kb)
  • Retrieve 6XFN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6XFN from S2C, [Save to disk]
  • View 6XFN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6XFN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6xfn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6xfn_B] [6xfn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6XFN
  • Community annotation for 6XFN at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science