6XVF Membrane Protein date Jan 21, 2020
title Crystal Structure Of Bovine Cytochrome Bc1 In Complex With T Quinolone Inhibitor Jag021
authors K.Amporndanai, S.S.Hasnain, S.V.Antonyuk
compound source
Molecule: Cytochrome B-C1 Complex Subunit 1, Mitochondrial
Chain: A
Synonym: Complex III Subunit 1,Core Protein I,Ubiquinol-Cyt Reductase Complex Core Protein 1;
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 2, Mitochondrial
Chain: B
Synonym: Complex III Subunit 2,Core Protein II,Ubiquinol-Cy Reductase Complex Core Protein 2;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Cytochrome B
Chain: C
Synonym: Complex III Subunit 3,Complex III Subunit III,Cyto C1 Complex Subunit 3,Ubiquinol-Cytochrome-C Reductase Compl Cytochrome B Subunit;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Cytochrome C1, Heme Protein, Mitochondrial
Chain: D
Synonym: Complex III Subunit 4,Complex III Subunit Iv,Cytoc Complex Subunit 4,Ubiquinol-Cytochrome-C Reductase Complex C1 Subunit,Cytochrome C-1;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Chain: E
Synonym: Complex III Subunit 5,Cytochrome B-C1 Complex Subu Rieske Iron-Sulfur Protein,Risp,Rieske Protein Uqcrfs1,Ubiq Cytochrome C Reductase Iron-Sulfur Subunit;
Ec: 7.1.1.8
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 7
Chain: F
Synonym: Complex III Subunit 7,Complex III Subunit Vii,Qp-C Ubiquinol-Cytochrome C Reductase Complex 14 Kda Protein;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 8
Chain: G
Synonym: Complex III Subunit 8,Complex III Subunit Viii,Ubi Cytochrome C Reductase Complex 9.5 Kda Protein,Ubiquinol-Cy Reductase Complex Ubiquinone-Binding Protein Qp-C;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 6, Mitochondrial
Chain: H
Synonym: Complex III Subunit 6,Complex III Subunit Viii,Cyt Non-Heme 11 Kda Protein,Mitochondrial Hinge Protein,Ubiquin Cytochrome C Reductase Complex 11 Kda Protein;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Chain: I
Synonym: Complex III Subunit 5,Cytochrome B-C1 Complex Subu Rieske Iron-Sulfur Protein,Risp,Rieske Protein Uqcrfs1,Ubiq Cytochrome C Reductase Iron-Sulfur Subunit;
Ec: 7.1.1.8
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 9
Chain: J
Synonym: Complex III Subunit 9,Complex III Subunit X,Cytoch Non-Heme 7 Kda Protein,Ubiquinol-Cytochrome C Reductase Com Kda Protein
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 65 2 2
R_factor 0.217 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
209.869 209.869 342.418 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand 6PE, CDL, FES, HEC, HEM, JAG, LMT, PEE, PG4, PO4, PX4 enzyme E.C.7.1.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


F


G


J


Primary referencePotent Tetrahydroquinolone Eliminates Apicomplexan Parasites., McPhillie MJ, Zhou Y, Hickman MR, Gordon JA, Weber CR, Li Q, Lee PJ, Amporndanai K, Johnson RM, Darby H, Woods S, Li ZH, Priestley RS, Ristroph KD, Biering SB, El Bissati K, Hwang S, Hakim FE, Dovgin SM, Lykins JD, Roberts L, Hargrave K, Cong H, Sinai AP, Muench SP, Dubey JP, Prud'homme RK, Lorenzi HA, Biagini GA, Moreno SN, Roberts CW, Antonyuk SV, Fishwick CWG, McLeod R, Front Cell Infect Microbiol. 2020 Jun 9;10:203. doi: 10.3389/fcimb.2020.00203., eCollection 2020. PMID:32626661
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (688 Kb) [Save to disk]
  • Biological Unit Coordinates (6xvf.pdb1.gz) 1343 Kb
  • LPC: Ligand-Protein Contacts for 6XVF
  • CSU: Contacts of Structural Units for 6XVF
  • Structure Factors (2261 Kb)
  • Retrieve 6XVF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6XVF from S2C, [Save to disk]
    • View 6XVF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6XVF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6xvf_C] [6xvf_H] [6xvf_D] [6xvf_E] [6xvf_I] [6xvf_J] [6xvf_A] [6xvf_G] [6xvf_B] [6xvf_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6XVF
  • Community annotation for 6XVF at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science