6XVK	Signaling Protein	date	Jan 22, 2020
title	Crystal Structure Of The Kdr (Vegfr2) Kinase Domain In Compl Type-II Inhibitor Bearing An Acrylamide
authors	M.Schimpl, K.Mcauley, E.A.Hoyt, M.Thomas, M.S.Bodnarchuk, H.J.Lew D.Barratt, M.J.Deery, D.J.Ogg, G.J.L.Bernardes, R.A.Ward, J.G.Ke M.J.Waring
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: A Fragment: Protein Kinase Domain (807-1171 Del[940-989]) Synonym: Vegfr-2,Fetal Liver Kinase 1,Flk-1,Kinase Insert D Receptor,Kdr,Protein-Tyrosine Kinase Receptor Flk-1; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdr, Flk1, Vegfr2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pfastbac1
symmetry	Space Group: P 1 21 1	R_factor 0.206 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.550 57.010 59.890 90.00 109.73 90.00
method	X-Ray Diffraction	resolution	1.99 Å
ligand	O3E	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Alkynyl Benzoxazines and Dihydroquinazolines as Cysteine Targeting Covalent Warheads and Their Application in Identification of Selective Irreversible Kinase Inhibitors., McAulay K, Hoyt EA, Thomas M, Schimpl M, Bodnarchuk MS, Lewis HJ, Barratt D, Bhavsar D, Robinson DM, Deery MJ, Ogg D, Bernardes GJL, Ward RA, Waring MJ, Kettle JG, J Am Chem Soc. 2020 May 15. doi: 10.1021/jacs.9b13391. PMID:32412754

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (6xvk.pdb1.gz) 105 Kb LPC: Ligand-Protein Contacts for 6XVK CSU: Contacts of Structural Units for 6XVK Structure Factors (716 Kb) Retrieve 6XVK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6XVK from S2C, [Save to disk]

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6xvk_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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