6XXJ Transferase date Jan 27, 2020
title Crystal Structure Of Human Deoxyhypusine Synthase In Complex Spermidine And Nad
authors E.Wator, P.Wilk, P.Grudnik
compound source
Molecule: Deoxyhypusine Synthase
Chain: A, B
Synonym: Dhs
Ec: 2.5.1.46
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dhps, Ds
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Pet24d
symmetry Space Group: P 32 2 1
R_factor 0.143 R_Free 0.160
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.486 105.486 160.831 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.41 Å
ligand ACT, BME, CSS, EDO, FMT, MRD, NAD, OXM, PGE, SPD enzyme Transferase E.C.2.5.1.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (6xxj.pdb1.gz) 499 Kb
  • LPC: Ligand-Protein Contacts for 6XXJ
  • CSU: Contacts of Structural Units for 6XXJ
  • Structure Factors (1254 Kb)
  • Retrieve 6XXJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6XXJ from S2C, [Save to disk]
    • View 6XXJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6XXJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6xxj_B] [6xxj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6XXJ
  • Community annotation for 6XXJ at PDBWiki (http://pdbwiki.org)

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