OCA Atlas for 6Y88

6Y88

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

137, CIT, GOL, PO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, G, C, B, F, A, D, H

Primary reference

Structure and kinetics of indole-3-glycerol phosphate synthase from Pseudomonas aeruginosa - decarboxylation is not essential for indole formation., Soderholm A, Newton MS, Patrick WM, Selmer M, J Biol Chem. 2020 Sep 14. pii: RA120.014936. doi: 10.1074/jbc.RA120.014936. PMID:32928960

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (661 Kb) [Save to disk]

Biological Unit Coordinates (6y88.pdb1.gz) 88 Kb

Biological Unit Coordinates (6y88.pdb2.gz) 89 Kb

Biological Unit Coordinates (6y88.pdb3.gz) 88 Kb

Biological Unit Coordinates (6y88.pdb4.gz) 87 Kb

Biological Unit Coordinates (6y88.pdb5.gz) 89 Kb

Biological Unit Coordinates (6y88.pdb6.gz) 86 Kb

Biological Unit Coordinates (6y88.pdb7.gz) 80 Kb

Biological Unit Coordinates (6y88.pdb8.gz) 86 Kb

LPC: Ligand-Protein Contacts for 6Y88

CSU: Contacts of Structural Units for 6Y88

Structure Factors (1216 Kb)

Retrieve 6Y88 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6Y88 from S2C, [Save to disk]

View 6Y88 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6y88_H] [6y88_A] [6y88_B] [6y88_C] [6y88_D] [6y88_E] [6y88_F] [6y88_G]

SWISS-PROT database:

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