6YBD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component 3 eukaryotic translation initi... 4 eukaryotic translation initi... 5 eukaryotic translation initi... 6 eukaryotic translation initi... 8 metallopeptidase activity isopeptidase activity eukaryotic translation initi... G cytosolic small ribosomal su... H cytosolic small ribosomal su... I cytosolic small ribosomal su... K cytosolic small ribosomal su... L cytosolic small ribosomal su... M cytosolic small ribosomal su... N virus receptor activity cytosolic small ribosomal su... O cytosolic small ribosomal su... P translation regulator activi... cytosolic small ribosomal su... Q small ribosomal subunit cytosolic small ribosomal su... u eukaryotic translation initi... v eukaryotic translation initi... x eukaryotic translation initi... y eukaryotic translation initi...
Primary reference	Structure of a human 48S translational initiation complex., Brito Querido J, Sokabe M, Kraatz S, Gordiyenko Y, Skehel JM, Fraser CS, Ramakrishnan V, Science. 2020 Sep 4;369(6508):1220-1227. doi: 10.1126/science.aba4904. PMID:32883864

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (577 Kb) [Save to disk] Biological Unit Coordinates (6ybd.pdb1.gz) 555 Kb CSU: Contacts of Structural Units for 6YBD Retrieve 6YBD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6YBD from S2C, [Save to disk]

View 6YBD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ybd_3] [6ybd_4] [6ybd_5] [6ybd_6] [6ybd_8] [6ybd_G] [6ybd_H] [6ybd_I] [6ybd_K] [6ybd_L] [6ybd_M] [6ybd_N] [6ybd_O] [6ybd_P] [6ybd_Q] [6ybd_u] [6ybd_v] [6ybd_x] [6ybd_y] SWISS-PROT database:

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