6YEZ Photosynthesis date Mar 25, 2020
title Plant Psi-Ferredoxin-Plastocyanin Supercomplex
authors I.Caspy, N.Nelson, Y.Shkolnisky, D.Klaiman, A.Sheinker
compound source
Molecule: Photosystem I P700 Chlorophyll A Apoprotein A1
Chain: A
Synonym: Psi-A,Psaa
Ec: 1.97.1.12
 Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888

Molecule: Photosystem I P700 Chlorophyll A Apoprotein A2
Chain: B
Synonym: Psi-B,Psab
Ec: 1.97.1.12
Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888

Molecule: Photosystem I Iron-Sulfur Center
Chain: C
Synonym: 9 Kda Polypeptide,Psi-C,Photosystem I Subunit Vii,
Ec: 1.97.1.12
Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888

Molecule: Psad
Chain: D
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Psae
Chain: E
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Psaf
Chain: F
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Psag
Chain: G
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Psah
Chain: H
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Photosystem I Reaction Center Subunit Viii
Chain: I
Synonym: Psi-I
Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888

Molecule: Psaj
Chain: J
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Photosystem I Reaction Center Subunit X Psak
Chain: K
Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888

Molecule: Psal
Chain: L
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Lhca1
Chain: 1
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Chlorophyll A-B Binding Protein, Chloroplastic
Chain: 2
Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888

Molecule: Chlorophyll A-B Binding Protein 3, Chloroplastic
Chain: 3
Synonym: Lhcii Type III Cab-3
Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888

Molecule: Chlorophyll A-B Binding Protein P4, Chloroplastic
Chain: 4
Synonym: Lhci Type III Cab-P4
Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888

Molecule: Ferredoxin-1, Chloroplastic
Chain: N
Synonym: Ferredoxin I
Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888

Molecule: Plastocyanin, Chloroplastic
Chain: P
Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.70 Å
ligand 3PH, BCR, C7Z, CA, CHL, CL0, CLA, CU, DGD, FES, LHG, LMG, LMT, LUT, PQN, SF4, XAT enzyme Oxidoreductase E.C.1.97.1.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • B
  • electron transfer activity


    • C


    K


    Primary referenceThe structure of a triple complex of plant photosystem I with ferredoxin and plastocyanin., Caspy I, Borovikova-Sheinker A, Klaiman D, Shkolnisky Y, Nelson N, Nat Plants. 2020 Oct;6(10):1300-1305. doi: 10.1038/s41477-020-00779-9. Epub 2020 , Oct 5. PMID:33020607
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (788 Kb) [Save to disk]
  • Biological Unit Coordinates (6yez.pdb1.gz) 680 Kb
  • LPC: Ligand-Protein Contacts for 6YEZ
  • CSU: Contacts of Structural Units for 6YEZ
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  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6yez_D] [6yez_C] [6yez_4] [6yez_A] [6yez_E] [6yez_3] [6yez_F] [6yez_1] [6yez_G] [6yez_2] [6yez_I] [6yez_H] [6yez_J] [6yez_B] [6yez_L] [6yez_N] [6yez_P] [6yez_K]
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  • Community annotation for 6YEZ at PDBWiki (http://pdbwiki.org)

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