6YJJ Cytosolic Protein date Apr 03, 2020
title Structure Of Cyri-B (Fam49b) From Rhincodon Typus (Selenomet Derivative)
authors E.Kaplan
compound source
Molecule: Cyri-B (Fam49b)
Chain: A
Engineered: Yes
 Organism_scientific: Rhincodon Typus
Organism_common: Whale Shark
Organism_taxid: 259920
Gene: Fam49b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.400 72.820 107.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE enzyme
Primary referenceStructure of CYRI-B (FAM49B), a key regulator of cellular actin assembly., Kaplan E, Stone R, Hume PJ, Greene NP, Koronakis V, Acta Crystallogr D Struct Biol. 2020 Oct 1;76(Pt 10):1015-1024. doi:, 10.1107/S2059798320010906. Epub 2020 Sep 23. PMID:33021503
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (6yjj.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 6YJJ
  • CSU: Contacts of Structural Units for 6YJJ
  • Structure Factors (484 Kb)
  • Retrieve 6YJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YJJ from S2C, [Save to disk]
    • View 6YJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6YJJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6yjj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6YJJ
  • Community annotation for 6YJJ at PDBWiki (http://pdbwiki.org)

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