6YLK Transferase date Apr 07, 2020
title Cdk2(F80c) With Covalent Adduct Tk22 At F80c
authors G.Craven, R.M.L.Morgan, D.J.Mann
compound source
Molecule: Cyclin-Dependent Kinase 2
Chain: A
Synonym: Cell Division Protein Kinase 2,P33 Protein Kinase
Ec: 2.7.11.22
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2, Cdkn2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.380 71.100 71.850 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand OY2 enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMultiparameter kinetic analysis for covalent fragment optimization using quantitative irreversible tethering (qIT)., Craven GB, Affron DP, Kosel T, Wong TLM, Jukes ZH, Liu CT, Morgan RML, Armstrong A, Mann DJ, Chembiochem. 2020 Jul 13. doi: 10.1002/cbic.202000457. PMID:32659037
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (6ylk.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 6YLK
  • CSU: Contacts of Structural Units for 6YLK
  • Structure Factors (1449 Kb)
  • Retrieve 6YLK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YLK from S2C, [Save to disk]
    • View 6YLK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6YLK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ylk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6YLK
  • Community annotation for 6YLK at PDBWiki (http://pdbwiki.org)

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