6YPN Transferase date Apr 16, 2020
title Crystal Structure Of Ck2alpha With 2 Molecules Of Adp Bound
authors P.Brear, M.Hyvonen
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: B
Synonym: Ck II Alpha
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk2a1, Ck2a1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phat2
symmetry Space Group: P 1 21 1
R_factor 0.205 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.392 45.225 62.631 90.00 109.90 90.00
method X-Ray Diffractionresolution 1.58 Å
ligand ACT, ADP, MG, PO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Primary referenceProposed Allosteric Inhibitors Bind to the ATP Site of CK2alpha., Brear P, Ball D, Stott K, D'Arcy S, Hyvonen M, J Med Chem. 2020 Oct 29. doi: 10.1021/acs.jmedchem.0c01173. PMID:33119282
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (6ypn.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 6YPN
  • CSU: Contacts of Structural Units for 6YPN
  • Structure Factors (1640 Kb)
  • Retrieve 6YPN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YPN from S2C, [Save to disk]
  • View 6YPN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6YPN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ypn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YPN
  • Community annotation for 6YPN at PDBWiki (http://pdbwiki.org)

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