6YRW Transferase date Apr 20, 2020
title Shmt From Streptococcus Thermophilus Tyr55ser Variant As Int Aldimine And As Non-Covalent Complex With D-Ser
authors G.Petrillo, K.Hernandez, J.Bujons, P.Clapes, I.Uson
compound source
Molecule: Serine Hydroxymethyltransferase
Chain: A, C, B, D
Synonym: Serine Methylase
Ec: 2.1.2.1
Engineered: Yes
 Organism_scientific: Streptococcus Thermophilus
Organism_taxid: 1308
Gene: Glya, Cda68_00974, Did82_07515
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.176 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
199.956 113.657 132.479 90.00 94.13 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand DSN, GOL, PLP enzyme Transferase E.C.2.1.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk]
  • Biological Unit Coordinates (6yrw.pdb1.gz) 134 Kb
  • Biological Unit Coordinates (6yrw.pdb2.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 6YRW
  • CSU: Contacts of Structural Units for 6YRW
  • Structure Factors (2859 Kb)
  • Retrieve 6YRW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YRW from S2C, [Save to disk]
    • View 6YRW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6YRW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6yrw_A] [6yrw_C] [6yrw_D] [6yrw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6YRW
  • Community annotation for 6YRW at PDBWiki (http://pdbwiki.org)

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